|BLAST (Basic Local Alignment Search Tool) is a set
of similarity search programs designed to explore all of the available
sequence database s regardless of whether the query is protein or DNA.
It is more than a tool to view sequences aligned with each other or to
calculate perce nt homology, but a program to locate regions of
sequence similarity with a view to comparing structure and function.
|WEGO WEGO (Web Gene Ontology Annotation Plot) is a
useful tool for plotting GO annotation results. It has been widely
used in many important biological research projects, such as the rice
genome project [Yu, J. et al. Science 296, 79-92 (2002); Yu, J. et al.
PLoS Biol 3, e38 (2005)] and the silkworm genome project [Xia, Q. et
al. Science 306, 1937-40 (2004)]. It has become one of the daily tools
for downstream gene annotation analysis, especially when performing
comparative genomics tasks. WEGO along with two other tools, namely
External to GO Query and GO Archive Query, are freely available for
|BGF (Beijing Gene Finding), developed by the Gene
Finding Team at BGI, is a program for gene identification in
eukaryotic genomic DNA sequences. It is b ased on Dynamic Programming
and HSMM (Hidden Semi-Markov Model) algorithm with a special emphasis
on rice genomes.(Mirror in Fudan University)
|FGF(Fishing Gene Family) is a useful tool for
finding gene family and plotting phylogenetic tree. Besides these, it
also gives the gene duplication evolutional information. We named it
Fishing Gene Family (FGF), because using a gene as bait you can fish
all the gene family and the related information. FGF can be widely
used in the analysis of gene duplication and gene family evolution,
especially for the research of new functional gene by duplication.
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